YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221229555, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRPRSRRA VNLQILPSSM TVLSICAGLT SIRFALEHQP KAAIALIAAA AILDGLDGRV  60
   61 ARILGAESRM GEEIDSLADA VNFGVAPAVV LYATMLSTTP VGWVAVLLYP VCVVLRLARF 120
  121 NALLDDGTQP AYTREFFVGM PAPAGAVSVI GLLALKLQFG AGWWTSTWFL CIWVTGTSML 180
  181 LISRIPMKKM HTVSVPPHYA AVFVAMLAIF AAAVVLAPYL LIWVIILTYL CHIPFAIHNQ 240
  241 RWLAAHPEAW DDKFKQQHDA RRAARRACPN RHAVPRLGLL KPGSRSMVRS GLRKPGRRFI 300
  301

Type	Start	End	Confidence
Cytoplasmic	1	12	0.89
Transmembrane Helix	13	34	0.91
Non-Cytoplasmic	35	41	0.78
Transmembrane Helix	42	61	0.79
Cytoplasmic	62	75	0.76
Transmembrane Helix	76	96	0.78
Non-Cytoplasmic	97	100	0.70
Transmembrane Helix	101	120	0.86
Cytoplasmic	121	135	0.83
Transmembrane Helix	136	155	0.95
Non-Cytoplasmic	156	163	0.69
Transmembrane Helix	164	183	0.94
Cytoplasmic	184	194	0.79
Transmembrane Helix	195	215	0.85
Non-Cytoplasmic	216	218	0.53
Transmembrane Helix	219	238	0.75
Cytoplasmic	239	300	0.72