YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215429259
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGKPRGRRG VNLQILPSAM TVLSICAGLT AIKFALEHQP KAAMALIAAA AILDGLDGRV  60
   61 ARILDAQSRM GAEIDSLADA VNFGVTPALV LYVSMLSKWP VGWVVVLLYA VCVVLRLARY 120
  121 NALQDDGTQP AYAHEFFVGM PAPAGAVSMI GLLALKMQFG EGWWTSVWFL SFWVTGTSIL 180
  181 LVSGIPMKKM HAVSVPPNYA AALLAVLAIC AAAAVLAPYL LIWVIIIAYM CHIPFAVRSQ 240
  241 RWLAQHPEVW DDKPKQRRAV RRASRRAHPY RPSMARLGLR KPGRRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.89
Transmembrane Helix	13	34	0.92
Non-Cytoplasmic	35	41	0.78
Transmembrane Helix	42	61	0.78
Cytoplasmic	62	76	0.74
Transmembrane Helix	77	95	0.56
Non-Cytoplasmic	96	98	0.55
Transmembrane Helix	99	120	0.84
Cytoplasmic	121	135	0.54
Transmembrane Helix	136	155	0.94
Non-Cytoplasmic	156	163	0.52
Transmembrane Helix	164	185	0.90
Cytoplasmic	186	194	0.54
Transmembrane Helix	195	217	0.78
Non-Cytoplasmic	218	218	0.37
Transmembrane Helix	219	236	0.74
Cytoplasmic	237	286	0.76