YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSBQ1_MAIZE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAMASMTG LSQGVLPSRR ADSRTRTAVV IVRASAEGDA VAQAGRRAVI GLVATGIVGG  60
   61 ALSQAARAET VKTIKIGAPP PPSGGLPGTL NSDQARDFDL PLKERFYLQP LPPAEAAARV 120
  121 KTSAQDIINL KPLIDKKAWP YVQNDLRLRA SYLRYDLKTV IASKPKEEKK SLKELTGKLF 180
  181 STIDDLDHAA KIKSTPEAEK YFAATKDALG DVLAKLG

Type	Start	End	Confidence
Signal Peptide	1	17	0.68
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	217	0.97