YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSN1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLVQNAAN NVLNDGMDTS RHTSSTAAPP SRNEVELNGQ PPTAPPPQVV TDSEEDEDEE  60
   61 LTLKYGAKHV IMLFIPVTLC MVVVVATIKS VSFYTQKDGQ QLIYTPFRED TETVGQRALH 120
  121 SMLNAIIMIS VIVVMTLVLV VLYKYRCYKV IQAWLFFSNL LLLFFFSLIY LGEVFKTYNV 180
  181 AMDYFTLALI IWNFGVVGMI CIHWKGPLRL QQAYLIMISA LMALVFIKYL PEWTAWLILA 240
  241 AISVYDLLAV LCPKGPLRIL VETAQERNEA IFPALIYSST MVWLFNMADS AETRNNSSHP 300
  301 VPQQENQVVA MAPTAQAEDD GGFTPAWVDH QQHQLGPMQS TEESRRQIQE MPSARPPPPA 360
  361 DDDEERGVKL GLGDFIFYSM LVGKASATAS GDWNTTLACF VAILIGLCLT LLLLAIFKKA 420
  421 LPALPISITF GLVFYFATDN LVRPFMDQLA VHQFYI

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	91	0.91
Non-Cytoplasmic	92	122	0.93
Transmembrane Helix	123	143	0.94
Cytoplasmic	144	152	0.79
Transmembrane Helix	153	172	0.95
Non-Cytoplasmic	173	183	0.76
Transmembrane Helix	184	204	0.92
Cytoplasmic	205	211	0.82
Transmembrane Helix	212	230	0.91
Non-Cytoplasmic	231	234	0.79
Transmembrane Helix	235	257	0.79
Cytoplasmic	258	392	0.62
Transmembrane Helix	393	416	0.88
Non-Cytoplasmic	417	420	0.37
Transmembrane Helix	421	442	0.74
Cytoplasmic	443	456	0.49