YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSBS_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQTMLLTSG VTAGHFLRNK SPLAQPKVHH LFLSGNSPVA LPSRRQSFVP LALFKPKTKA  60
   61 APKKVEKPKS KVEDGIFGTS GGIGFTKANE LFVGRVAMIG FAASLLGEAL TGKGILAQLN 120
  121 LETGIPIYEA EPLLLFFILF TLLGAIGALG DRGKFVDDPP TGLEKAVIPP GKNVRSALGL 180
  181 KEQGPLFGFT KANELFVGRL AQLGIAFSLI GEIITGKGAL AQLNIETGIP IQDIEPLVLL 240
  241 NVAFFFFAAI NPGNGKFITD DGEES

Type	Start	End	Confidence
Cytoplasmic	1	90	0.93
Transmembrane Helix	91	112	0.82
Non-Cytoplasmic	113	131	0.72
Transmembrane Helix	132	150	0.89
Cytoplasmic	151	199	0.84
Transmembrane Helix	200	216	0.59
Non-Cytoplasmic	217	235	0.44
Transmembrane Helix	236	250	0.57
Cytoplasmic	251	265	0.61