YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRIO2_TRAST
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSHIGSWI LVLFVAMWSD VALCKKRPKP GGGWNTGGSR YPGQGSPGGN RYPPQEGGDW  60
   61 GQPHGGGWGQ PHVGGWGQPH GGGWGQPHGG GGWGQGGTHG QWNKPSKPKT NMKHVAGAAA 120
  121 AGAVVGGLGG YMLGSAMSRP LIHFGSDYED RYYRENMYRY PNQVYYRPVD QYSNQNNFVH 180
  181 DCVNITVKQH TVTTTTKGEN FTETDIKMME RVVEQMCITQ YQRESEAYYQ RGASVILFSS 240
  241 PPVILLISFL IFLIVG

Type	Start	End	Confidence
Signal Peptide	1	24	0.75
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	114	0.79
Transmembrane Helix	115	134	0.81
Cytoplasmic	135	232	0.66
Transmembrane Helix	233	255	0.90
Non-Cytoplasmic	256	256	0.69