YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168263371, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.88
Transmembrane Helix	32	52	0.73
Non-Cytoplasmic	53	64	0.73
Transmembrane Helix	65	88	0.88
Cytoplasmic	89	97	0.89
Transmembrane Helix	98	120	0.91
Non-Cytoplasmic	121	127	0.62
Transmembrane Helix	128	153	0.75
Cytoplasmic	154	166	0.86
Transmembrane Helix	167	190	0.91
Non-Cytoplasmic	191	198	0.87
Transmembrane Helix	199	219	0.91
Cytoplasmic	220	257	0.97
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	296	0.91
Transmembrane Helix	297	318	0.92
Cytoplasmic	319	326	0.86
Transmembrane Helix	327	346	0.96
Non-Cytoplasmic	347	352	0.79
Transmembrane Helix	353	376	0.88
Cytoplasmic	377	387	0.80
Transmembrane Helix	388	410	0.90
Non-Cytoplasmic	411	418	0.86
Transmembrane Helix	419	438	0.94
Cytoplasmic	439	500	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRKKIKPI TLGDVTIIDD GKLRKAITAA SLGNAMEWFD FGVYGFVAYA LGKVFFPGAD  60
   61 PSVQMIAALA TFSVPFLIRP LGGLFFGMLG DKYGRQKILA ITIVIMSIST FCIGLIPSYA 120
  121 TIGIWAPILL LLCKMAQGFS VGGEYTGASI FVAEYSPDRK RGFMGSWLDF GSIAGFVLGA 180
  181 GVVVLISTIV GEENFLEWGW RIPFFIALPL GIIGLYLRHA LEETPAFQQH VDKLEQGDRE 240
  241 GLQDGPKVSF KEIATKHWRS LLSCIGLVIA TNVTYYMLLT YMPSYLSHNL HYSEDHGVLI 300
  301 IIAIMIGMLF VQPVMGLLSD RFGRRPFVIM GSIALFALAI PAFILINSNV IGLIFAGLLM 360
  361 LAVILNCFTG VMASTLPAMF PTHIRYSALA AAFNISVLIA GLTPTLAAWL VESSQDLMMP 420
  421 AYYLMVIAVI GLITGISMKE TANRPLKGAT PAASDIQEAK EILGEHYDNI EQKIDDIDQE 480
  481 IAELQVKRSR LVQQHPRIDE