YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRA1_USTHO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDHVTPFFA LFACILVLFA LGWHIRSRNV GTITLSLYLF FGNLDNFVNS VAWWSTAEDK  60
   61 APGFCEVSIR LRHALYIAIP ASNLVIARKL ESIASTRQVR ASASEHKKSI IIDLLISVGL 120
  121 PVLYVSLMIV NQTNRYGIIE QVGCWPFLSL SWVWVLLVAA PVLIVSFASA VYSVLAFRWF 180
  181 WIRRRQFQAV LASSASTLNK ARYIRLLVLT AIDMLLFFPI YVGSVSDTIR GAITTSYVSW 240
  241 SYVHTGFSYI PQFSAEVMEM QPSFKARLIL SRLVCPISAY IFFAMFGLGQ EARQGYKHAV 300
  301 LKALVFCKLR KERQKPIQNH IVANIEVVTF QSRETSGGID GSPHSEKFSI NTPTKYEEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.76
Transmembrane Helix	7	25	0.95
Cytoplasmic	26	34	0.73
Transmembrane Helix	35	54	0.56
Non-Cytoplasmic	55	70	0.52
Transmembrane Helix	71	87	0.56
Cytoplasmic	88	109	0.90
Transmembrane Helix	110	130	0.94
Non-Cytoplasmic	131	154	0.87
Transmembrane Helix	155	182	0.88
Cytoplasmic	183	202	0.97
Transmembrane Helix	203	222	0.95
Non-Cytoplasmic	223	232	0.72
Transmembrane Helix	233	251	0.63
Cytoplasmic	252	267	0.64
Transmembrane Helix	268	289	0.89
Non-Cytoplasmic	290	359	0.72