YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POTI_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLPVVRSP WRIVILLLGF TFLYAPMLML VIYSFNSSKL VTVWAGWSTR WYGELLRDDA  60
   61 MMSAVGLSLT IAACAATAAA ILGTIAAVVL VRFGRFRGSN GFAFMITAPL VMPDVITGLS 120
  121 LLLLFVALAH AIGWPADRGM LTIWLAHVTF CTAYVAVVIS SRLRELDRSI EEAAMDLGAT 180
  181 PLKVFFVITL PMIMPAIISG WLLAFTLSLD DLVIASFVSG PGATTLPMLV FSSVRMGVNP 240
  241 EINALATLIL GAVGIVGFIA WYLMARAEKQ RIRDIQRARR G

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	35	0.91
Non-Cytoplasmic	36	68	0.90
Transmembrane Helix	69	91	0.94
Cytoplasmic	92	109	0.75
Transmembrane Helix	110	132	0.89
Non-Cytoplasmic	133	140	0.83
Transmembrane Helix	141	163	0.88
Cytoplasmic	164	183	0.89
Transmembrane Helix	184	205	0.93
Non-Cytoplasmic	206	241	0.69
Transmembrane Helix	242	265	0.90
Cytoplasmic	266	281	0.68