YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	POTC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRLLRGGF MTAIYAYLYI PIIILIVNSF NSSRFGINWQ GFTTKWYSLL MNNDSLLQAA  60
   61 QHSLTMAVFS ATFATLIGSL TAVALYRYRF RGKPFVSGML FVVMMSPDIV MAISLLVLFM 120
  121 LLGIQLGFWS LLFSHITFCL PFVVVTVYSR LKGFDVRMLE AAKDLGASEF TILRKIILPL 180
  181 AMPAVAAGWV LSFTLSMDDV VVSSFVTGPS YEILPLKIYS MVKVGVSPEV NALATILLVL 240
  241 SLVMVIASQL IARDKTKGNT GDVK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	30	0.88
Non-Cytoplasmic	31	63	0.89
Transmembrane Helix	64	86	0.90
Cytoplasmic	87	97	0.82
Transmembrane Helix	98	122	0.88
Non-Cytoplasmic	123	130	0.70
Transmembrane Helix	131	151	0.93
Cytoplasmic	152	171	0.95
Transmembrane Helix	172	195	0.85
Non-Cytoplasmic	196	229	0.93
Transmembrane Helix	230	251	0.90
Cytoplasmic	252	264	0.93