YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PO2F1_RAT
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTPAQQQLLL QQAQAQAQLL AAAVQQHSAS QQHSAAGATI SASAATPMTQ IPLSQPIQIA  60
   61 QDLQQLQQLQ QQNLNLQQFV LVHPTTNLQP AQFIISQTPQ GQQGLLQAQN LLTQLPQQSQ 120
  121 ANLLQPQPSI TLTSQPTTPT RTIAATPIQT LPQSQTTPKR IDTPSLEEPS DLEELEQFAK 180
  181 TFKQRRIKLG FTQGDVGLAM GKLYGNDFSQ TTISRFEALN LSFKNMCKLK PLLEKWLNDA 240
  241 ENLSSDSTAS SPSALNSPGL GAEGLNRRRK KRTSIETNIR VALEKSFMEN QKPTSEDITL 300
  301 IAEQLNMEKE VIRVWFCNRR QKEKRINPPS SGGTSSSPIK AIFPSPTSLV ATTPSLVTSS 360
  361 TATTLTVNPV LPLTSAAMTN LSLTGTTDST SNNTATVIST APPASSAVTS PSLSPSPSAS 420
  421 ASTSEASSAS ETSTTQTTST PLPSPLGASQ VMVTASGLQT AAAAALQGAA QLPANASLAA 480
  481 MAAAAGLNPG LMAPSQFAAG GALLSLNPGT LGGALSPALM SNSTLATIQA LASSGSLPIT 540
  541 SLDATGNLVF ANAGGAPNIV TAPLFLNPQN LSLLTSNPVS LVSAAAASTG NSAPTASLHA 600
  601 SSTSTESIQN SLFTVASASG AASTTTAASK AQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	445	0.89
Transmembrane Helix	446	466	0.57
Cytoplasmic	467	475	0.44
Transmembrane Helix	476	493	0.63
Non-Cytoplasmic	494	510	0.55
Transmembrane Helix	511	532	0.54
Cytoplasmic	533	547	0.45
Transmembrane Helix	548	566	0.46
Non-Cytoplasmic	567	632	0.54