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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PMT1_CANAL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKPVTPAS KVAAKQAAVR SRHQEDVFTL DPLIDPIFQK GELRSYLVTE PSPSVLKKRS  60
   61 IHTKEYWMLS SLLLIAFYVR MYNLSNPNSV VFDEVHFGGF ARKYILGTFF MDVHPPLAKM 120
  121 LFGAVGAIGG FKGDFEFKSI GDKFPDSTPY IFMRQFPALL GVGTVILCYL TLRQSGVRPI 180
  181 IAYITTFLLI IENSNVTISR YILLDSPLIF FIAAAIYAWK KFEIQIPFTF GWYRSLLATG 240
  241 IALGLALSSK WVGLFTVAWV GFLCIYQLWF LIGDLSVSTK KIWGHFFARG IILLGVPIAL 300
  301 YLGFFAIHFQ LLNKEGDGGA FMSSAFRAGL QGNKIPRDIT EQVGLGSVVT IRHVDTQGGY 360
  361 LHSHEHFYQT GSKQQQITLY PHLDSNNKWL IEPYNGTIHN ETFVPLINGM KIRLKHINTG 420
  421 RRLHSHDEKP PVSERDWQKE CSCYGYDGFA GDANDDWVVE IVNYRSQKGE AQTFVKAINT 480
  481 IFRLRHAMTG HYLFSSEVKL PEWGFGQQEV TSASQGKRAL THWYIETNEN SILPPSEAKI 540
  541 INYPKLSLWQ KVVESHKRMW KINQGLTSHH HWQSSPSEWP LLLRGINYWN KEHKQVYLLG 600
  601 NAVTWWAATL SIITFGTYVL VTVFRWHLGT PLSTNKHVFN FNVQTFSYVL GWALHYLPFF 660
  661 IMGRQLFLHH YLPALYFGIL ALGHFFEIFT GYLTSRSKYF QQVAFVLVGL FSILSLVFYV 720
  721 NYSSLIYGTP WTKASCELTK PFSGWDYNCG TFFDTLGEYD IQEKSLASES EIPTETVVVE 780
  781 AKQTPKAEPK LAKQDDHIES PAAAEPVEEK EVKEEVEQLA PPLAVDFEEE TPKVEDPQVA 840
  841 DVDASSNDEK SVEEKQQQEQ QQEQEQVEDE SVHQVQQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle