YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|161365525, gi...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.22
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIFRLIVT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPAD  60
   61 AENYGNAIYI ANHQNNYDMV TAANIVQPPT VTVGKKSLLW IPFFGQLYWL TGNLLIDRNN 120
  121 RAKAHSTIAA VVNHFKKRRI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIIPVCVS 180
  181 NTSNKVNLNR LNNGLVIVEM LPPVDVSEYG KDQVRELAAH CRALMEQKIA ELDKEVAERE 240
  241 ATGKV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.50
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	97	0.53
Transmembrane Helix	98	112	0.22
Cytoplasmic	113	160	0.58
Transmembrane Helix	161	177	0.45
Non-Cytoplasmic	178	245	0.69