YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PKR2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDQNGNTSF APDLNPPQDH VSLLPLNYSY GDYDIPLDDD EDVTKTQTFF AAKIVIGVAL  60
   61 AGIMLVCGVG NFVFIAALAR YKKLRNLTNL LIANLAISDF LVAIVCCPFE MDYYVVRQLS 120
  121 WEHGHVLCAS VNYLRTVSLY VSTNALLAIA IDRYLAIVHP LKRMNYQTAS FLIALVWMVS 180
  181 ILIAIPSAYF TTETILVIVK NQEKLFCGQI WPVDQQLYYK SYFLFVFGLE FVGPVVTMTL 240
  241 CYARISQELW FKAVPGFQTE QIRKRLRCRR KTVLLLMGIL TAYVLCWAPF YGFTIVRDFF 300
  301 PTLVVKEKHY LTAFYVVECI AMSNSMINTI CFVTVKNNTM KYFKKMLLLH WRPSHYGSKS 360
  361 SADLDLKTSG VPATEEVDCI RLK

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.92
Transmembrane Helix	54	78	0.88
Cytoplasmic	79	89	0.78
Transmembrane Helix	90	111	0.85
Non-Cytoplasmic	112	135	0.78
Transmembrane Helix	136	156	0.81
Cytoplasmic	157	167	0.86
Transmembrane Helix	168	189	0.91
Non-Cytoplasmic	190	220	0.95
Transmembrane Helix	221	243	0.92
Cytoplasmic	244	271	0.97
Transmembrane Helix	272	293	0.94
Non-Cytoplasmic	294	312	0.91
Transmembrane Helix	313	335	0.77
Cytoplasmic	336	383	0.82