YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PICO_DROAN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.79
Transmembrane Helix	9	29	0.68
Non-Cytoplasmic	30	59	0.90
Transmembrane Helix	60	83	0.80
Cytoplasmic	84	91	0.79
Transmembrane Helix	92	111	0.93
Non-Cytoplasmic	112	121	0.73
Transmembrane Helix	122	142	0.84
Cytoplasmic	143	153	0.84
Transmembrane Helix	154	176	0.89
Non-Cytoplasmic	177	185	0.80
Transmembrane Helix	186	207	0.94
Cytoplasmic	208	243	0.95
Transmembrane Helix	244	264	0.76
Non-Cytoplasmic	265	291	0.85
Transmembrane Helix	292	313	0.88
Cytoplasmic	314	324	0.80
Transmembrane Helix	325	343	0.82
Non-Cytoplasmic	344	348	0.74
Transmembrane Helix	349	369	0.90
Cytoplasmic	370	379	0.81
Transmembrane Helix	380	403	0.88
Non-Cytoplasmic	404	417	0.83
Transmembrane Helix	418	439	0.92
Cytoplasmic	440	483	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLGMANAY VMRTNMSVAI VAMVNHTAIK SGEEEYDDEC GDRDIPIDDS QDGEFPWNAA  60
   61 LQGYILSSFF YGYVITQIPF GILAKKYGSL RFLGYGMLIN SVFAFLVPVA AREGGVWGLC 120
  121 AVRFIQGLGE GPIVPCTHAM LAKWIPPNER SRMGAAVYAG AQFGTIISMP LSGLLAEYGF 180
  181 DGGWPSIFYV FGIVGTVWSI AFLIFVYEDP STHPKIDERE KKYINESLWG TDVIKSPPIP 240
  241 FKSIVKSLPF YAILFAHMGH NYGYETLMTE LPTYMKQVLR FSLKSNGLLS SLPYLAMWLL 300
  301 SMFISVIADW MISSKRFSLT ATRKIINSIG QYGPGLALIA ASYTGCDRAL TLAILTIGVG 360
  361 LNGGIYSGFK INHLDLTPRF AGFLMSITNC SANLAGLLAP IAAGNLISDP SKPVMGQWQI 420
  421 VFFIAAFVYI ICGTFYNIFG SGERQFWDNP SEDEQKPALE SSSTTNPPRL SNGSSAPRAI 480
  481 SSS