YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|170774078
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHSKTLLLT AAAGLMLTCG AVSSQAKHKL SDPYHFTVNA AAETEPVDTA GDAADDPAIW  60
   61 LDPKTPQNSK LITTNKKSGL VVYSLDGKML HSYNTGKLNN VDIRYDFPLN GKKVDIAAAS 120
  121 NRSEGKNTIE IYAIDGKNGT LQSMTDPDHP IATAINEVYG FTLYHSQKTG KYYAMVTGKE 180
  181 GEFEQYELKA DKNGYISGKK VRAFKMNSQT EGMAADDEYG RLYIAEEDEA IWKFSAEPDG 240
  241 GSNGTVIDRA DGRHLTRDIE GLTIYYAADG KGYLMASSQG NSSYAIYDRQ GKNKYVADFR 300
  301 ITDGPETDGT SDTDGIDVLG FGLGPEYPFG IFVAQDGENI DHGQKANQNF KIVPWERIAD 360
  361 QIGFRPLANE QVDPRKLTDR SGK

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	383	0.99