YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSPG2_CHICK
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNIKSIIW MCSTLAITYM LPKVKAEKKT LVKGSLSGTS VLPCFFSTTP TIASSYAAEY  60
   61 LRIKWSKVEL DKSGKDAKET TVLVAQNGNI KIGQNYKDRV SVPTHSEETG DASLTFSRLR 120
  121 ASDAGVYRCD VMYGVEDTQG IVSLAVDGVV FHYRAATSRY TLNFTQAQQT CLDNGAVIAS 180
  181 PEQLKAAYED GFEQCDAGWL SDQTVRYPIR HPRIGCFGDK MGKKGVRTYG RRFPNETYDV 240
  241 YCYVEHMQDE VVHVSVPEKL TFEEAKELCR KRDGVLASVG NMYVAWRNGF DQCDYGWLAD 300
  301 GSVRYPASVA RPQCGGGLLG VRTLYRYENQ TGFPYPDSKF DAYCYERKKI VSEPTTVKLV 360
  361 TTLKTDSVEL SSAKVTLKPS VFESSVTEVA VTKTKVPAWE EATLETEDTK MTTEVAEEKR 420
  421 EMEVLMENIK LTTLLPQTVT DGEISPYDTL GRTEYDVSPR LTESTSAALE VEHTYSEAEL 480
  481 SEEQGRSEST EDAFLTSVVF QDSTAVAKSS TGSWEDIETG DTQKHDGDNQ TEQIEVGPVM 540
  541 TATDSLVPAS QRELPRTGSS VSLTKENLYL GSHSTKEPTK KSMEAKSDKK LTTVVIPKAL 600
  601 FTDQYDLTTG GEGRESMYTV MPDRVSGVAL VSIPESDVPA VSETLMDELA VTTGQSSTAD 660
  661 ESTPFIKFSS SATELDNEAS AEGSREDLKD VHLTTSSGIP VSFTLFTANE TGSEVTALSE 720
  721 STSAPQKFEE GITSVLHSSQ QTEGSAILEK QEKTKEPEMS TIDAKVLYIT TVVPASVTAG 780
  781 SEGRFGSEKF THTPPVSGMW LQTDKDQVYM TEETSHTKRI ELDTEDDISG MEPTSSPGQI 840
  841 IEYTKHLGAP VSAVTDETKT SMETAETESD EEVVSADFDQ TKGTTEVFHT SSSLDLEKFT 900
  901 LSKIPEDESS ATVKSFSSSS GTVLPTAVAT VLEVTDHEAD ETSGYVLNMT FSTPEGEQRK 960
  961 ATEKSPATSA EDEVSTGTEI SKYTMTEGGQ ISSVTSAEKE SVAALQEREE QPSVGLPETK1020
 1021 EPFKFTDVTE IETTVPQREG DTSLVPVTVG SEDIGEMQVT DHTSFDSIIH TEATVTSTKA1080
 1081 SEVFPKELST KDQDRELGTA MGSTLPVTSV QMHEQKTTAG FESPQTTTQE KHDEMGSAYD1140
 1141 EMYPATELSV PALMLTEYGQ VSGPVETSTR SLHLTGTPKA ETATDQEEKI TEAVPVTFGT1200
 1201 QAKVYESKGT TTREEDRDVG SWNSVLPPHT MLSSPSTAGS ISLLTLGASP SQTPEGSGIS1260
 1261 EELEEVKTVP FSSRATDKTT VISDLTTSSI SAVDKIQPTS ASKPFVSSKS PRIIPEEDEE1320
 1321 VTSSDIIVID ESISPSKASA EDDLTGKMVE PEIDKEYFTS STATAVARPT APPTVMEATE1380
 1381 ALQPQEVSPT SHPDSGTDIR LYVIQITGND TDHPVNEFLD LFSRHILPHA VDETHTDAES1440
 1441 AQTEPCTSDS VQDSSEYIIL DPFFPNFMDF EEEEEDCENT TDVTTPPALQ FINGKQQVTS1500
 1501 APKSTKAEEA RSDQIESVAH SKNVTFSQIN ETNTFIISET EASGTMQPSK AGEVMGAFEV1560
 1561 TQPTADVAML EPVYSGESEV TTTDKYLEIT SVYEQSPKKN KETVMWHGTE ESSTKDTKNL1620
 1621 LLITNESSGD GSTESDLSRS VFTEILTMSS HEDSEKISHT TSVPTILSVE RSAVTAAPSA1680
 1681 DSDTATVGID VKDLIPKGGT ATPGNYYKST IKLDAEFPFE SNPEATSHTT KPDMTASSFI1740
 1741 VLEGSGDVEE NSTLASAMTT ETAVAETLSV QDTSLGSGTV LPTEISVTIS EITPALPGGT1800
 1801 RILYSTFDQS SEATVSTNFV SELIMEQVVG SSVATEKKVE DEKEVQTTVY SSQEISTTDA1860
 1861 KGKSELDEFG STTNEVRTVS QEPTPLREIV PITGTMHSEI KKVTATPFLR EKLFINEGSA1920
 1921 EEPADLFAGS PTRKVVSTDS PFTDSGSGDI DVITESATLT SVPSRSVIET QTVKHEGNIN1980
 1981 VISVSLKNTT TEYEEHIGTG GPVTSVSSTG SDGLTEESEV AIEMSENVFS TENQGEPTQE2040
 2041 AVPTYTAPSD IKSRLGSRRE VTSHVTPVIR TKDLETAEVT SSPESVVNNS TLDTMVTHGT2100
 2101 IRAVAESTES KKGKGSFSAV SLGKILMIEH GSGEELKVDS STTKLMSNGP TEKLLGSHFS2160
 2161 FFDQGSGEAE TLTESFTKAS VSPTGKPEPQ EQYGRKTVSM PSAVVHAYTA EPNELVTSTE2220
 2221 HDITSLQTVT DTEMEEKAAN ELTVTSFATN LPLSEDVHSW EDRPREILPK AIESSGEATE2280
 2281 DPFFISTQAN HEHVEFLSVP TIRPHSEENK VEAESDEKIL LPFNNDRVTE SAVIERKYLS2340
 2341 SPFTDTEQEE ELVQNIFPTE DIPRLFLTPK EEKPTNNELI SDPLFSGQGS GDEFTVIPSV2400
 2401 ESLAVKETTN TLSPWPFHPA SVGPKLSTDK TQVFESGSTD SNAEINEEIT TTAAELTETA2460
 2461 YSMATSSPAL EEESSSHSNS KDKDITHYFL VIEDPYNKEM DHRRGENGTS RPLPTPGDVS2520
 2521 LEESSHMLTT DDVTPVSVIL SETPYLEMGK SLATSATKMP SRVLPESSGE GSGWDGVSDS2580
 2581 FAPDTLTHST APSVMEVELT ASSHIPGVYS EVMTTHVPGD GSQTVITGLA SLFTEEKEIV2640
 2641 ANRTAADPKT GTSEELTSDT GMSLDIIPVV DDRRHVTLNV SVYGDITLIE ERLQIPSEKT2700
 2701 TIIDMDHSKS MPEDIISVQT MPNLVIRSTQ VSDDNMKAEE DKYDSILNFS TVEENSFGSG2760
 2761 DNLSLTTSIQ PSSESVTAGH GPKLVDKDLG SGYAMQFATE TLTTTVLNEL GIFLPTVPSL2820
 2821 VSPHMPHESK ESEFEAKHIG RTSTTDDVYE PYTSANNQVI TDQSKTMSIS GFSGMGQEES2880
 2881 GDKKPMIPSL TPDLTMETEK ALTTDTFDVS MVTTQSMSQH ATVSSSSSEE KHSTVYMQTK2940
 2941 SASTEYEETD SVSLNSVSQN PKSSVTVWLV NGVSKYPEVI IPSTSSAKDS DQSDHSSDGT3000
 3001 FKEVSSDMAA TYKPPTTDLD TTVSSLLVFS PEPESESIST ESTPHFNKFV TERSEETESS3060
 3061 VNDLIIEENA TVSGDSPSIH DYPTAFWNFG ERTSTDVPKL STIEVEFSSE RVKNPSQESD3120
 3121 RSTERERPRL SSAPVSDSPN SIEVGVFKPD QEAVTMLTSS LEPLDRSLET QSALLGPLLG3180
 3181 QQEITTISSN IATNNTAPGN NPYSNEQSTI SSELLNTIEL VTSSFSLPEV TNGSDFLIGT3240
 3241 SVGSVEGTAV QIPGQDPCKS NPCLNGGTCY PRGSFYICTC LPGFNGEQCE LDIDECQSNP3300
 3301 CRNGATCIDG LNTFTCLCLP SYIGALCEQD TETCDYGWHK FQGQCYKYFA HRRTWDTAER3360
 3361 ECRLQGAHLT SILSHEEQVF VNRIGHDYQW IGLNDKMFER DFRWTDGSPL QYENWRPNQP3420
 3421 DSFFSAGEDC VVIIWHENGQ WNDVPCNYHL TYTCKKGTVA CGQPPVVENA KTFGKMKPRY3480
 3481 EINSLIRYHC KDGFIQRHIP TIRCQGNGRW DMPKITCMNP STYQRTYSKK YYYKHSSSGK3540
 3541 GTSLNSSKHY HRWIRTWQDS RR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle