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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CSPG2_BOVIN
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLINIKSILW MCSTLIAAHA LQKVNMEKSP PVKGSLSGKV NLPCHFSTMP TLPPSYNTTS  60
   61 EFLRIKWSKI ELDKTGKDLK ETTVLVAQNG NIKIGQDYKG RVSVPTHPED VGDASLTMVK 120
  121 LLASDAGRYR CDVMYGIEDT QDTVSLTVEG VVFHYRAATS RYTLNFEMAQ KACVDIGAVI 180
  181 ATPEQLHAAY EDGFEQCDAG WLSDQTVRYP IRVPREGCYG DMMGKEGVRT YGFRAPHETY 240
  241 DVYCYVDHLD GDVFHITAPN KFTFEEAGEE CKTQDARLAT VGELQAAWRN GFDRCDYGWL 300
  301 LDASVRHPVT VARAQCGGGL LGVRTLYRFE NQTGFPTPDS RFDAYCFKPK QNISEATTIE 360
  361 LNMLAETVSP TLLEELQVGL DRMTPIVPLI TELPVITTKV PPIGNIVNFE QKSTVQPLTS 420
  421 THRSATESLP PDGSMKKPWD MDYYSPSASG PLGEPDVSEI KEEVPQSTTV VSHHAPDSWD 480
  481 GVKEDLQIKD SVTQIEQIEV GPLVTSMEIS KHIPSKEFTV TVTPFVSTTM TLESKTEKKA 540
  541 ISTVSESVTT SHYGFTLREG DGEDRISTVR SGQSTSIFSQ IPEVITVSKT SEDTTRGQLE 600
  601 DVESVSASTI VSPDSDGSPM DHRQEKQTHG RITEGFLGQY VSTTPFPSQH HTEVELFPYS 660
  661 GDKRLVEGTS TVISPTPRTG RERTETLRPA MRTVTYTNDE IQEKITKDSS IEKIEEEGFS 720
  721 GMKFPTASPE QIHHTKYSVG MTKSFESPAL MTTTKPGVTP TEATDVEEDF TTPSGLETDG 780
  781 YQDTTEYEEG ITTVHLIQST LNVEVVTVSK WSLDEDNTTS KPLGSTEHVG SPKLPPALIT 840
  841 TTGVSGKDKE MPSLTEDGRD EFTRIPGSTQ RPLEEFTEED TTDHEKFTVR FQPTTSIATT 900
  901 EKSTLRDSIT EERVPPFTST EVRVTHATIE GSALDEGEDV DVSKPLSTVP QFAHPSDVEG 960
  961 STFVNYSSTQ EPTTYVDTSH TIPLPVIPKT EWGVLVPSIP SEGEVLGEPS QDIRVINQTH1020
 1021 FEASMYPETV RTTTEITQEA TREDFLWKEQ TPEKPVSPPS STTDTAKETT PPLDEQESDG1080
 1081 SAYTVFEDRS VMGSDRVSVL VTTPIGKFEQ HTSFPPGAVT KAKTDEVVTL TPTTGSKVTF1140
 1141 SPWPKQKYET EGTSPRGFVS PFSIGVTQLI EETTTEKREK TSLDYIDLGS GLFEKPKATE1200
 1201 LPEFSTVKAT VPSDTAAFSS ADRLHTPSAS TEKPPLIDRE PDEETTSDMV IIGESTSRVP1260
 1261 PTTLEDIVAK KTETDIDREY FTTSSTSTTQ PTRPPTVEGK EAFGPQAFST PEPPAGTKFH1320
 1321 PDINVYIIEV RENKTGRMSD FSVSGHPIDS ESKEDEPCSE ETDPEHDLIA EILPELLGML1380
 1381 HSEEDEEDEE CANATDVTTT PSVQYINGKH VVTTVPKDPE AAEARRGQFE SVAPSQNFSD1440
 1441 SSESDSHQFI ITHAGLPTAM QPNESKETTE SLEITWRPEI YPETAEPFSS GEPDIFPTAS1500
 1501 IHEGEATEGP DSITEKNPEL DHLVHEHAES VPLFPEESSG DAAIDQESQK IIFSGATEGT1560
 1561 FGEEAEKSST THTPSMVASS VSAPVSEDAS FILTGTPQSD EPLSTVESWV EITPRHTVEF1620
 1621 SGSPSIPIPE GSGEAEEDKD KIFAMITDLS QRNTTDPRVT SDTSKIMITE SLVDVPTTTI1680
 1681 YSISEQVSAV VPTKFVRETD TYEWVFSPPL EETTRKEEEK GTTGTASTVE VHSPTQRLDQ1740
 1741 FVSPSELESS SETPPDDSAA ATRKSFTSQM TPTQSERETT SSTVVFKETE VLDNLAAQTT1800
 1801 DPSLSSQPGV LEVSPTVPGS PVSLFMEQGS GEAAVDPETT TVSSLSLNIE PEILAKEEAA1860
 1861 GAWSPNVETV FPFEPTEQVL STAVDREVAE TISQTSKENL VSEISGEPTH RAEIKGFSTD1920
 1921 FPLEEDFSGD FREYSTVSYP ITKEEIVMME GSGDAAFKDT QMLPSVTPTS DLSNHTADSE1980
 1981 EPGSTLVSTS AFPWEEFTAS AEGSGEPLLS VSSSVDQVFP SAAGKASGTD SPFIDQRLGE2040
 2041 EGAINETDQR STILPTAEAE STKASTEEGE VKENHTVSMD FPPTVEPDEL WPRQEVNPVR2100
 2101 QGNGSEIVSE EKTQEQESFE PLQSSVAPEQ TTFDSQTFPE PGLQTTGYFT LTTKKTYSTD2160
 2161 ERMEEEVISL ADVSTPTLDS KGLVLYTTLP EVTEKSHFFL ATASVTESVP AESVIAGSTI2220
 2221 KEEESIKPFP KVTSPIIKES DTDLIFSGLG SGEEVLPTLG SVNFTEIEQV LSTLYPLTSQ2280
 2281 VQSLEASILN DTSGDYEGME NVANEMRPLI SKTDSIFEDG ETASSTTLPE ILSDARTEGP2340
 2341 FTAPLTFSTG PGQPQNQTHR RAEEIQTSRP QPLTDQVSSE NSVTAETKET ATPATDFLAR2400
 2401 TYDLEMAKGF VTPTPKPSDL FYEHSGEGSG ELDAVGAEVH ASGMTQATRQ GSTTFVSDRS2460
 2461 LEKHPKVPSV EAVTVNGFPT VSMVLPLHPE QREGSPEATG TPASTASYEK ATEGAADSFQ2520
 2521 DHFWGFKDST LKPDKRKATE SIIIDLDKED KDLILTMTES TILEIIPELT SDKNTVIDID2580
 2581 HTKPIYEDIL GMQTDLDPEV PSGPPDSSEE STQVQEKYEA AVNLSSTEEN FEASGDILLA2640
 2641 NYTQATPESK APEDRNPLDH TDFIFTTGIP ILSSETELDV LLPTATSLPI PSKSATVNPE2700
 2701 SKTEAKTLED IFESSTLSDG QAIADQSEVI STLGYLERTQ NEDEAKKYVS PSFQPEFSSG2760
 2761 AEEALTDPTP YVSIGTTYLT AQSLTEAPDV MEGARLPDSI DTSTVSAFSE LLSQTPSFPP2820
 2821 LSIHLGSGDS EHSEDLQPSA LPSTDASTPP VSSGELANIE ATFKPSSEED FYITEPPSLP2880
 2881 PDTEPSEDES KPKLLEPTEA SATELIAQEE IEIFQNSDNT TSVQVSGEAV KVFPSIETPE2940
 2941 AEAIVTAASE TKLEGATLRP HSTSASVIHG VEAGVVPQPS PQTSERPTIL SPLEISPETQ3000
 3001 AALIRGEDST VAAPKQQVPT RMLDSNKQAT LSTTELNTEL ATPSFPLLET SNETSFLIGI3060
 3061 NEESVEGTAV YLPGPDRCKM NPCLNGGTCY PTETSYVCTC VPGYSGDRCE LDFDECHSNP3120
 3121 CRNGATCIDG FNTFRCLCLP SYVGALCEQD TETCDYGWHK FQGQCYKYFA HRRTWDAAER3180
 3181 ECRLQGAHLT SILSHEEQMF VNRVGHDYQW IGLNDKMFEH DFRWTDGSTL QYENWRPNQP3240
 3241 DSFFSTGEDC VVIIWHENGQ WNDVPCNYHL TYTCKKGTVA CGQPPVVENA KTFGKMKPRY3300
 3301 EINSLIRYHC KDGFIQRHLP TIRCLGNGRW AMPKITCLNP SAYQRTYSKK YFKNSSSAKD3360
 3361 NSINTSKHDH RWSRRWQESR R

YRC Informatics Platform - Version 3.0
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