YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER2_ARAHY
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVFNNKKF ILVFVFMLGL CIGITTVHGQ GTRVGFYSRT CPRAESIVRS TVRSHVNSDP  60
   61 TLAAKILRMH FHDCFVQGCD GSILISGPAT EKTAFANLGL RGYEIIDDAK TQLEAACPGV 120
  121 VSCADILALA ARDSVVLSGG LSWQVPTGRR DGRVSQASDV SNLPAPSDSV DVQKQKFAAK 180
  181 GLNTQDLVTL VGGHTIGTSE CQFFSNRLFN FNGTAAADPA IDPSFVSNLQ ALCPQNTGAA 240
  241 NRVALDTGSQ FKFDTSYFSN LRNRRGVLQS DQALWNDPST KSFVQRYLGL RGFLGLTFNV 300
  301 EFGKSMVKMS NIGVKTGTDG EIRKICSAFN

Type	Start	End	Confidence
Signal Peptide	1	29	0.82
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	330	0.99