YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38069, gi\|105009
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLLLGLV ALSECIIHKV PLVRKKSLRR NLSEHGLLKD FLKKHNFNPA SKYFPQAEAP  60
   61 TLIDEQPLEN YLDMEYFGTI GIGTPAQDFT VIFDTGSSNL WVPSVYCSSL ACTNHNRFNP 120
  121 QDSSTYQSTS GTVSITYGTG SMTGILGYDT VQVGGISDTN QIFGLSETEP GSFLYYAPFD 180
  181 GILGLAYPSI SSSGATPVFD NIWNQGLVSQ DLFSVYLSAD DQSGSVVIFG GIDSSYYTGS 240
  241 LNWVPVSVEG YWQISVDSIT MNGEAIACAE GCQAIVDTGT SLLTGPTSPI ANIQSDIGAS 300
  301 ENSDGEMVVS CSAISSLPDI VFTINGIQYP VPPSAYILQS QGSCISGFQG MDVPTESGEL 360
  361 WILGDVFIRQ YFTVFDRANN QVGLAPVA

Type	Start	End	Confidence
Signal Peptide	1	15	0.97
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	388	0.99