YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCAK_ACIAD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	58	0.86
Non-Cytoplasmic	59	72	0.84
Transmembrane Helix	73	92	0.94
Cytoplasmic	93	101	0.80
Transmembrane Helix	102	121	0.95
Non-Cytoplasmic	122	127	0.79
Transmembrane Helix	128	149	0.92
Cytoplasmic	150	159	0.84
Transmembrane Helix	160	184	0.85
Non-Cytoplasmic	185	191	0.70
Transmembrane Helix	192	211	0.89
Cytoplasmic	212	273	0.93
Transmembrane Helix	274	295	0.90
Non-Cytoplasmic	296	308	0.89
Transmembrane Helix	309	330	0.93
Cytoplasmic	331	338	0.84
Transmembrane Helix	339	358	0.91
Non-Cytoplasmic	359	362	0.84
Transmembrane Helix	363	385	0.89
Cytoplasmic	386	397	0.85
Transmembrane Helix	398	419	0.90
Non-Cytoplasmic	420	426	0.75
Transmembrane Helix	427	451	0.86
Cytoplasmic	452	457	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKEANMASQ DYATQRSSLD AQALINDAPL SRYQWLIAIV CFLIVFVDGI DTAAMGFIAP  60
   61 ALAQDWGVDR SQLGPVMSAA LGGMIIGALV SGPTADRFGR KIVLSMSMLV FGGFTLACAY 120
  121 STNLDSLVIF RFLTGIGLGA AMPNATTLFS EYCPARIRSL LVTCMFCGYN LGMAIGGFIS 180
  181 SWLIPAFGWH SLFLLGGWAP LILMLLVIFF LPESYRFLIV KGKNTKKVRQ ILSRIAPQKV 240
  241 QGVTEFHVPE EKVEAGTKKG VFGMLFSAKY VKGTVLLWVT YFMGLVMIYL LTSWLPTLMR 300
  301 ETGASLERAA FLGGLFQFGG VLSALFIGWA MDRFNPNRII AGFYLAAGIF AVIVGQSLSN 360
  361 PTLLALFILC AGIAVNGAQS SMPVLSARFY PTQCRATGVA WMSGIGRFGA VFGAWIGAVL 420
  421 LGNNWSFTMI LSMLIIPAAA AAIAIFVKSL VAHTDAT