YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAG_HORSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWFGVLGLV TLSECLVTIP LVKIKSLREN LREKDMLKEY LEKYPFRLTH KLLHKHADSG  60
   61 VAFEPMRNYL DIAYMGIISV GTPPQEFQVI FDTGSADLWV PSIYCSSPAC SNHNTFNPLR 120
  121 SSTFVASGQP IKLIYGTGKM SGFVGYDTIK ISSLVDRNQA FGLSVEEPDK ILELATFDGI 180
  181 LGLSYPSLSV KGVTPVFDNL WNQGLLSQKL FAFYLSRKGK KGSVVMFGGV DPSYYTGELH 240
  241 WVPVSKPLYW QISMDSISIN GKVIACDGGC QAIVDTGTSL LLGPQDAVLN IQEIIQARRS 300
  301 TSGEYFIDCD AVNTLPDILF TIDGIGYPVP ANAYIQKDAA LGICFSSFEG NEDISNNSEE 360
  361 WILGDVFLRL YFTVFDREND RIGLATAV

Type	Start	End	Confidence
Signal Peptide	1	15	0.74
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	388	0.98