YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAFA_BOVIN
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSKLHALF CLCTCLALVY PFDWQDLNPV AYIESPAWVS KIQALMAAAN IGQSKIPRGN  60
   61 GSYSVGCTDL MFDYTNKGTF LRLYYPSQDD DHSDTLWIPN KEYFLGLSKF LGTHWLVGKI 120
  121 MGLFFGSMTT PAAWNAHLRT GEKYPLIIFS HGLGAFRTIY SAIGIDLASH GFIVAAVEHR 180
  181 DGSASSTYYF KDQSAVEIGN KSWLYLRTLK RGEEEFPLRN EQLRQRAKEC SQALSLILDI 240
  241 DHGRPVTNVL DLEFDVEQLK DSIDRDKIAI IGHSFGGATV IQTLSEDQRF RCGIALDAWM 300
  301 FPVGDEVYSR IPQPLFFINS ERFQYPSNII RMKKCFLPDR ERKMITIRGS VHQNFVDFTF 360
  361 ATSKIIGYLF TLKGDIDSNV AISLSNKASL AFLQKHLGLQ KDFDQWDSLV EGEDHNLIPG 420
  421 TNINTTNHQA ILQNSTGIER PNLD

Type	Start	End	Confidence
Signal Peptide	1	21	0.94
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	444	0.97