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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PAC_ECOLX
Protein type: Globular with Signal Peptide
Type Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNRNRMIVN CVTASLMYYW SLPALAEQSS SEIKIVRDEY GMPHIYANDT WHLFYGYGYV  60
   61 VAQDRLFQME MARRSTQGTV AEVLGKDFVK FDKDIRRNYW PDAIRAQIAA LSPEDMSILQ 120
  121 GYADGMNAWI DKVNTNPETL LPKQFNTFGF TPKRWEPFDV AMIFVGTMAN RFSDSTSEID 180
  181 NLALLTALKD KYGVSQGMAV FNQLKWLVNP SAPTTIAVQE SNYPLKFNQQ NSQTAALLPR 240
  241 YDLPAPMLDR PAKGADGALL ALTAGKNRET IAAQFAQGGA NGLAGYPTTS NMWVIGKSKA 300
  301 QDAKAIMVNG PQFGWYAPAY TYGIGLHGAG YDVTGNTPFA YPGLVFGHNG VISWGSTAGF 360
  361 GDDVDIFAER LSAEKPGYYL HNGKWVKMLS REETITVKNG QAETFTVWRT VHGNILQTDQ 420
  421 TTQTAYAKSR AWDGKEVASL LAWTHQMKAK NWQEWTQQAA KQALTINWYY ADVNGNIGYV 480
  481 HTGAYPDRQS GHDPRLPVPG TGKWDWKGLL PFEMNPKVYN PQSGYIANWN NSPQKDYPAS 540
  541 DLFAFLWGGA DRVTEIDRLL EQKPRLTADQ AWDVIRQTSR QDLNLRLFLP TLQAATSGLT 600
  601 QSDPRRQLVE TLTRWDGINL LNDDGKTWQQ PGSAILNVWL TSMLKRTVVA AVPMPFDKWY 660
  661 SASGYETTQD GPTGSLNISV GAKILYEAVQ GDKSPIPQAV DLFAGKPQQE VVLAALEDTW 720
  721 ETLSKRYGNN VSNWKTPAMA LTFRANNFFG VPQAAAEETR HQAEYQNRGT ENDMIVFSPT 780
  781 TSDRPVLAWD VVAPGQSGFI APDGTVDKHY EDQLKMYENF GRKSLWLTKQ DVEAHKESQE 840
  841 VLHVQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle