YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAAG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMEFILSHVE KGVMTLTLNR PERLNSFNDE MHAQLAECLK QVERDDTIRC LLLTGAGRGF  60
   61 CAGQDLNDRN VDPTGPAPDL GMSVERFYNP LVRRLAKLPK PVICAVNGVA AGAGATLALG 120
  121 GDIVIAARSA KFVMAFSKLG LIPDCGGTWL LPRVAGRARA MGLALLGNQL SAEQAHEWGM 180
  181 IWQVVDDETL ADTAQQLARH LATQPTFGLG LIKQAINSAE TNTLDTQLDL ERDYQRLAGR 240
  241 SADYREGVSA FLAKRSPQFT GK

Type	Start	End	Confidence
Cytoplasmic	1	102	0.80
Transmembrane Helix	103	125	0.75
Non-Cytoplasmic	126	133	0.80
Transmembrane Helix	134	152	0.60
Cytoplasmic	153	262	0.64