YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P2RX4_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCCSVLGS FLFEYDTPRI VLIRSRKVGL MNRAVQLLIL AYVIGWVFVW EKGYQETDSV  60
   61 VSSVTTKAKG VAVTNTSQLG FRIWDVADYV IPAQEENSLF IMTNMIVTVN QTQSTCPEIP 120
  121 DKTSICNSDA DCTPGSVDTH SSGVATGRCV PFNESVKTCE VAAWCPVEND VGVPTPAFLK 180
  181 AAENFTLLVK NNIWYPKFNF SKRNILPNIT TSYLKSCIYN AQTDPFCPIF RLGTIVEDAG 240
  241 HSFQEMAVEG GIMGIQIKWD CNLDRAASLC LPRYSFRRLD TRDLEHNVSP GYNFRFAKYY 300
  301 RDLAGKEQRT LTKAYGIRFD IIVFGKAGKF DIIPTMINVG SGLALLGVAT VLCDVIVLYC 360
  361 MKKKYYYRDK KYKYVEDYEQ GLSGEMNQ

Type	Start	End	Confidence
Cytoplasmic	1	28	0.88
Transmembrane Helix	29	50	0.79
Non-Cytoplasmic	51	339	0.98
Transmembrane Helix	340	361	0.62
Cytoplasmic	362	388	0.67