YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXAA_RALSO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRTILWV IFSLSVVLLF DNWQRANGHQ SMFFPTPQTV TTTAAAPGGT PAGDVPKAAA  60
   61 PAAAGSQAAP ATGAVSQTPA SEKIVVTTDV IRATVDTAGA IVTKLELLTQ KDHDGNPMVL 120
  121 FDRSLERTYL ARSGLIGGDF PNHTTVFTAS AGPRDLGTGG EVSLTLTADK GGAKLAKTYV 180
  181 FKRGSYVIDT RFDVTNDGAA PINPTLYMEL ARDGGAVEQS RFYSTFTGPA VYTDTDHYHK 240
  241 ITFADIDKSK AHVPAPTDSG WVAMVQHYFA SAWIPAASAK REFYVDRIDT NFYRVGMQQA 300
  301 LGTVAPGASV SATARLFAGP QEERMLEGIT PGLELVKDYG WLTIIAKPLF WLLEKIHKLL 360
  361 GNWGWSIVAL TVLVKLVFFP LSATSYRSMA KMKDLQPRMT AIRERHKGDP QKMNQEMMTL 420
  421 YRTEKVNPLG GCLPIVIQIP VFIALYWVLL SSVEMRGAPW LGWVHDLASP DPFYILPILM 480
  481 AVSMFVQTRL NPTPPDPVQA KMMMFMPIAF SVMFFFFPAG LVLYWVVNNC LSIAQQWSIN 540
  541 RMLGTNKKAA AAK

Type	Start	End	Confidence
Signal Peptide	1	28	0.71
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	360	0.95
Transmembrane Helix	361	383	0.87
Cytoplasmic	384	426	0.94
Transmembrane Helix	427	450	0.90
Non-Cytoplasmic	451	471	0.85
Transmembrane Helix	472	490	0.89
Cytoplasmic	491	503	0.84
Transmembrane Helix	504	527	0.89
Non-Cytoplasmic	528	553	0.91