YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265065, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSYRAVLV SLSLLLVFVL SGCSNATPID AHSTGIWDHY FVYPISFMIQ FVAHHIPGAS  60
   61 FGIAIIIMTL VIRSAMIPLA VSQYRSQAKM KKMQPELQKL KQKYGDVSKD LEKQKQYQKE 120
  121 MSELMKSGGW NPLAGCWPLL IQMPIFSALY YAISRTEEIR TSTFLWVNLG HADPYHILPI 180
  181 IAALTTFIQM KVFQSNSTSG EQVQMLKMQQ IMMPAMILFM GFAAPSGLVL YWITGNLFTM 240
  241 MQTIVLRKIM EREELQLQKA

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	50	0.93
Transmembrane Helix	51	72	0.86
Cytoplasmic	73	132	0.90
Transmembrane Helix	133	153	0.88
Non-Cytoplasmic	154	173	0.91
Transmembrane Helix	174	193	0.91
Cytoplasmic	194	210	0.91
Transmembrane Helix	211	234	0.88
Non-Cytoplasmic	235	260	0.90