YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OXA1_KAZSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVANTSLRY SAFNFSLGRR FKSTSETLND LPETISEVQT QLPSIDQMTN ATADIVEQAS  60
   61 HSVGELSTHI GYLNSIGLAQ TWHWPADIIQ HALEYVHVYT GLPWWGTICT VTILVRLLMF 120
  121 PIYVKSSDTI AKNSRIKPQM DKVTKELMAT TDLAEGQKIA VRRRKLLSEN GIKNRWLAAP 180
  181 MLQLPIAIGF FNALRSMANF PVDGFANQGI LWFHDLTLSD PYLGLQFITA AVLMSFSRLG 240
  241 GETGAQQFSG PMKRFFIILP LVSIPATMNL STSVVLYFAI NGTFSVLQTL VLRNKWFRKK 300
  301 LNIAEVVQHP PDPTKENSGI FAAIKENMNT ARERSEKRKL MKEEEERVHE LIKKKRTNER 360
  361 IRIIRRPELK K

Type	Start	End	Confidence
Cytoplasmic	1	67	0.78
Transmembrane Helix	68	84	0.60
Non-Cytoplasmic	85	100	0.72
Transmembrane Helix	101	120	0.79
Cytoplasmic	121	171	0.95
Transmembrane Helix	172	194	0.84
Non-Cytoplasmic	195	221	0.85
Transmembrane Helix	222	241	0.89
Cytoplasmic	242	254	0.84
Transmembrane Helix	255	280	0.85
Non-Cytoplasmic	281	371	0.59