YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC2_BACCR
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLGLLAM VVALMAIATG CSETGQPITS KSTGIWNEYF VYPLSQLITY FADLFNSNYG  60
   61 LAIVITTLII RFALLPLMIK QTKSTKAMQA LQPEMVKLKE KYSSKDQATQ QKLQQEMMQL 120
  121 YQKNGVNPLA GCLPIFVQMP ILFAFYHAIM RTAEIKQHSF LWFDLGHADP FYILPVVAAI 180
  181 TTFIQQKLAM AGTAGQNPQM AMMLWLMPIM ILIFAINFPA ALSLYWVVGN IFGIAQMYFI 240
  241 KGPEIKASKA GKAGGSSK

Type	Start	End	Confidence
Signal Peptide	1	22	0.87
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	58	0.90
Transmembrane Helix	59	79	0.84
Cytoplasmic	80	125	0.95
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	167	0.87
Transmembrane Helix	168	189	0.83
Cytoplasmic	190	200	0.82
Transmembrane Helix	201	229	0.81
Non-Cytoplasmic	230	258	0.56