YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260182, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKLGLLAM VVALMAITAG CSEVNQPITP KSTGIWNEYF VYPLSQLITY FANLFGSNYG  60
   61 LAIVVTTLII RFALLPLMIK QTKSTKAMQA LQPEMVKLKE KYSSKDQATQ QKLQQEMMQL 120
  121 YQKNGVNPLA GCLPIFVQMP ILFAFYHAIM RTSEISKHTF LWFDLGQADP YYILPVVAAI 180
  181 TTFIQQKLAM AGTAGQNPQM AMMLWLMPIM ILIFAINFPA ALSLYWVVGN IFGIAQMYLI 240
  241 KGPEIKASKA GGSSK

Type	Start	End	Confidence
Signal Peptide	1	21	0.91
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	54	0.89
Transmembrane Helix	55	75	0.86
Cytoplasmic	76	125	0.95
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	169	0.89
Transmembrane Helix	170	189	0.87
Cytoplasmic	190	200	0.82
Transmembrane Helix	201	228	0.81
Non-Cytoplasmic	229	255	0.61