YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OST48_CANLF
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRRKMEAG AAARAWSLLW LLLPLLGPVC ASGPRTLVLL DNLNLRETHS LFFRSLKDRA  60
   61 FELTFKTADD PSLSLIKYGE FLYDNLIIFS PSVEDFGGNI NVETISTFID GGGSVLVAAS 120
  121 SDIGDPLREL GSECGIEFDE EKTAVIDHHN YDVSDLGQHT LIVADPENLL KAPTIVGRSS 180
  181 LNPILFRGVG MVADPDNPLV LDILTGSSTS YSFFPDKPIT QYPHAVGKNT LLIAGLQARN 240
  241 NARVVFSGSL DFFSDAFFNS AVQKAAPGSQ RYSQTGNYEL AVALSRWVFK EEGVLRVGPV 300
  301 SHHRVGETAP PNAYTVTDLV EYSIVIEQLS NGRWVPFDGD DIQLEFVRID PFVRTFLKKK 360
  361 GGKYSVQFKL PDVYGVFQFK VDYNRLGYTH LHSSTQVSVR PLQHTQYERF IPSAYPYYAS 420
  421 AFSMMLGLFI FSTVFLHMKE KEKSD

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	413	0.99
Transmembrane Helix	414	436	0.92
Cytoplasmic	437	445	0.91