YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSR1_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEHWGDAIY AARRKGDETT REAMFTYTNS NNTKDPFEGP NYHIAPRWVY NVATVWMFFV  60
   61 VVASTFTNGL VLVATAKFKK LRHPLNWILV NLAIADLGET LFASTISVIN QFFGYFILGH 120
  121 PMCIFEGYTV SVCGIAALWS LTVISWERWV VVCKPFGNVK FDAKWASAGI IFSWVWAAAW 180
  181 CAPPIFGWSR YWPHGLKTSC GPDVFSGSED PGVQSYMVVL MITCCIIPLA IIILCYIAVY 240
  241 LAIHAVAQQQ KDSESTQKAE KEVSRMVVVM IFAYCFCWGP YTFFACFAAA NPGYAFHPLA 300
  301 AAMPAYFAKS ATIYNPVIYV FMNRQFRVCI MQLFGKKVDD GSEVSTSKTE VSSVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	51	0.97
Transmembrane Helix	52	75	0.88
Cytoplasmic	76	86	0.84
Transmembrane Helix	87	109	0.86
Non-Cytoplasmic	110	123	0.77
Transmembrane Helix	124	146	0.87
Cytoplasmic	147	164	0.89
Transmembrane Helix	165	186	0.91
Non-Cytoplasmic	187	216	0.94
Transmembrane Helix	217	243	0.89
Cytoplasmic	244	265	0.90
Transmembrane Helix	266	288	0.89
Non-Cytoplasmic	289	299	0.73
Transmembrane Helix	300	322	0.77
Cytoplasmic	323	357	0.92