YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD2_ANGAN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPMSNVTGVV RSPFEYPQYY LAEPWAYSAL AAYMFFLIIA GFPINFLTLY  60
   61 VTIEHKKLRT PLNYILLNLA VADLFMVFGG FTTTMYTSMH GYFVFGPTGC NIEGFFATLG 120
  121 GEIALWCLVV LAVERWMVVC KPMSNFRFGE NHAIMGVAFT WVMALACAAP PLFGWSRYIP 180
  181 EGMQCSCGMD HYAPNPETYN ESFVIYMFIC HFTIPLTVIS FCYGRLVCTV KEATAQQQES 240
  241 ETTQRAEREV TRMVIIMVIS FLVCWVPYAS VAWYIFTHQG SSFGPIFMTI PAFFAKSSSL 300
  301 YNPLIYICMN KQSRNCMITT LCCGKNPFEE EEGASTTASK TEASSVSSVS PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.94
Transmembrane Helix	39	61	0.92
Cytoplasmic	62	73	0.85
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	113	0.86
Transmembrane Helix	114	133	0.92
Cytoplasmic	134	152	0.82
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	202	0.96
Transmembrane Helix	203	227	0.86
Cytoplasmic	228	252	0.93
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.71
Transmembrane Helix	286	305	0.77
Cytoplasmic	306	352	0.86