YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_SMICR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPYSNKSGVV RSPYEEPQYY LAEPWMFSCL AAYMFMLIVL GFPINFLTLY  60
   61 VTIQHKKLRT PLNYILLNLA VADLFMVICG FTTTLVTSLN GYFVFGTTGC LVEGFFATTG 120
  121 GEVALWALVV LAIERYIVVC KPMSNFRFGE NHAIMGVAFT WIMALACSVP PIFGWSRYIP 180
  181 EGMQCSCGID YYTLNPEFNN ESFVIYMFVV HFIIPLTVIF FCYGQLVFTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVIA FLICWVPYAS VAFYIFTHQG SDFGPIFMTL PAFFAKSSSI 300
  301 YNPVIYIMMN KQFRNCMITT LCCGKNPLGD DEASTTASKT ETSQVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.97
Transmembrane Helix	39	63	0.87
Cytoplasmic	64	73	0.92
Transmembrane Helix	74	96	0.91
Non-Cytoplasmic	97	113	0.76
Transmembrane Helix	114	133	0.87
Cytoplasmic	134	152	0.79
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	203	0.97
Transmembrane Helix	204	227	0.87
Cytoplasmic	228	252	0.90
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.82
Transmembrane Helix	286	307	0.83
Cytoplasmic	308	348	0.92