YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_SALPV
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPYFY IPMVNTTGIV RSPYEYPQYY LVNPAAYAAL GAYMFFLILL GFPINFLTLY  60
   61 VTLEHKKLRT PLNYILLNLA VADLFMVFGG FTTTMYTSMH GYFVLGRLGC NLEGFFATLG 120
  121 GEIGLWSLVV LAIERWVVVC KPISNFRFGE NHAIMGLAFT WIMACACAVP PLVGWSRYIP 180
  181 EGMQCSCGVD YYTRAEGFNN ESFVVYMFTC HFCIPLTIIG FCYGRLLCAV KEAAAAQQES 240
  241 ETTQRAEREV TRMVILMVVG FLVCWLPYAS VAWYIFSNQG SQFGPLFMTI PAFFAKSSSV 300
  301 YNPMIYICMN KQFRHCMITT LCCGKNPFEE EEGASTTASK TEASSVSSSS VSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.88
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	73	0.86
Transmembrane Helix	74	95	0.92
Non-Cytoplasmic	96	114	0.86
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	152	0.90
Transmembrane Helix	153	174	0.93
Non-Cytoplasmic	175	204	0.95
Transmembrane Helix	205	227	0.89
Cytoplasmic	228	252	0.92
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.84
Transmembrane Helix	286	308	0.69
Cytoplasmic	309	354	0.81