YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPFSNITGVV RSPFEQPQYY LAEPWQFSML AAYMFLLIVL GFPINFLTLY  60
   61 VTVQHKKLRT PLNYILLNLA VADLFMVFGG FTTTLYTSLH GYFVFGPTGC NLEGFFATLG 120
  121 GEIGLWSLVV LAIERYVVVC KPMSNFRFGE NHAIMGVAFT WVMALACAAP PLVGWSRYIP 180
  181 EGMQCSCGID YYTLKPEVNN ESFVIYMFVV HFTIPMIVIF FCYGQLVFTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVIF FLICWLPYAS VAMYIFTHQG SNFGPIFMTL PAFFAKTASI 300
  301 YNPIIYIMMN KQFRNCMLTS LCCGKNPLGD DEASATASKT ETSQVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.96
Transmembrane Helix	39	63	0.88
Cytoplasmic	64	73	0.91
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	114	0.85
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	152	0.89
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	207	0.92
Transmembrane Helix	208	229	0.90
Cytoplasmic	230	249	0.96
Transmembrane Helix	250	276	0.81
Non-Cytoplasmic	277	285	0.80
Transmembrane Helix	286	307	0.86
Cytoplasmic	308	348	0.96