YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_RHIMB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY IPMSNKTGVV RSPFEYPQYY LAEPWQYSVL CAYMFLLILL GFPINFMTLY  60
   61 VTIQHKKLRT PLNYILLNLA FANHFMVLCG FTVTMYSSMN GYFVFGQTGC YVEGFFATLG 120
  121 GEIALWSLVV LAIERYVVVC KPMSNFRFSE NHAIMGVAFT WIMALACAAP PLFGWSRYIP 180
  181 EGMQCSCGVD YYTLKPEVNN ESFVIYMFVV HFLIPLIIIF FCYGRLVCTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVVF FLICWVPYAS VAFFIFTHQG SEFGPVFMTI PAFFAKSSSI 300
  301 YNPVIYIMLN KQFRNCMITT LCCGKNPFGD EDASSAATSK TEASSVSSSQ VSPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.97
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	73	0.86
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	113	0.85
Transmembrane Helix	114	133	0.90
Cytoplasmic	134	152	0.80
Transmembrane Helix	153	173	0.95
Non-Cytoplasmic	174	203	0.95
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	253	0.91
Transmembrane Helix	254	276	0.90
Non-Cytoplasmic	277	286	0.80
Transmembrane Helix	287	309	0.75
Cytoplasmic	310	354	0.86