YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_ALLMI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPDFY IPFSNKTGVV RSPFEYPQYY LAEPWKYSAL AAYMFMLIIL GFPINFLTLY  60
   61 VTVQHKKLRS PLNYILLNLA VADLFMVLGG FTTTLYTSMN GYFVFGVTGC YFEGFFATLG 120
  121 GEVALWCLVV LAIERYIVVC KPMSNFRFGE NHAIMGVVFT WIMALTCAAP PLVGWSRYIP 180
  181 EGMQCSCGVD YYTLKPEVNN ESFVIYMFVV HFAIPLAVIF FCYGRLVCTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVVS FLICWVPYAS VAFYIFSNQG SDFGPVFMTI PAFFAKSSAI 300
  301 YNPVIYIVMN KQFRNCMITT LCCGKNPLGD DETATGSKTE TSSVSTSQVS PA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.98
Transmembrane Helix	39	62	0.91
Cytoplasmic	63	73	0.88
Transmembrane Helix	74	96	0.91
Non-Cytoplasmic	97	113	0.84
Transmembrane Helix	114	133	0.92
Cytoplasmic	134	152	0.81
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	203	0.95
Transmembrane Helix	204	227	0.86
Cytoplasmic	228	252	0.92
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	286	0.84
Transmembrane Helix	287	308	0.82
Cytoplasmic	309	352	0.91