YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OP1S2_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQQQTPEL FEDFHMPITL DVSNISAYSP FLVPQDHLGH SGVFMGMSAF MLFLFIAGTA  60
   61 INVLTIVCTI QYKKLRSHLN YILVNLAISN LWVSVFGSSV AFYAFYKKYF VFGPIGCKIE 120
  121 GFTSTIGGMV SLWSLAVVAL ERWLVICKPL GNFTFKTPHA IAGCILPWCM ALAAGLPPLL 180
  181 GWSRYIPEGL QCSCGPDWYT TNNKFNNESY VMFLFCFCFA VPFSTIVFCY GQLLITLKLA 240
  241 AKAQADSAST QKAEREVTKM VVVMVFGFLI CWGPYAIFAI WVVSNRGAPF DLRLATIPSC 300
  301 LCKASTVYNP VIYVLMNKQF RSCMMKMVFN KNIEEDEASS SSQVTQVSSV APEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.73
Transmembrane Helix	47	70	0.87
Cytoplasmic	71	80	0.89
Transmembrane Helix	81	105	0.89
Non-Cytoplasmic	106	121	0.90
Transmembrane Helix	122	145	0.84
Cytoplasmic	146	156	0.88
Transmembrane Helix	157	180	0.85
Non-Cytoplasmic	181	210	0.96
Transmembrane Helix	211	234	0.90
Cytoplasmic	235	259	0.90
Transmembrane Helix	260	282	0.91
Non-Cytoplasmic	283	294	0.88
Transmembrane Helix	295	316	0.58
Cytoplasmic	317	354	0.61