YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Rh6-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLHPPSFA YMRDGRNLSL AESVPAEIMH MVDPYWYQWP PLEPMWFGII GFVIAILGTM  60
   61 SLAGNFIVMY IFTSSKGLRT PSNMFVVNLA FSDFMMMFTM FPPVVLNGFY GTWIMGPFLC 120
  121 ELYGMFGSLF GCVSIWSMTL IAYDRYCVIV KGMARKPLTA TAAVLRLMVV WTICGAWALM 180
  181 PLFGWNRYVP EGNMTACGTD YFAKDWWNRS YIIVYSLWVY LTPLLTIIFS YWHIMKAVAA 240
  241 HEKAMREQAK KMNVASLRNS EADKSKAIEI KLAKVALTTI SLWFFAWTPY TIINYAGIFE 300
  301 SMHLSPLSTI CGSVFAKANA VCNPIVYGLS HPKYKQVLRE KMPCLACGKD DLTSDSRTQA 360
  361 TAEISESQA

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.77
Transmembrane Helix	46	72	0.87
Cytoplasmic	73	83	0.90
Transmembrane Helix	84	106	0.86
Non-Cytoplasmic	107	121	0.80
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	161	0.90
Transmembrane Helix	162	184	0.89
Non-Cytoplasmic	185	211	0.96
Transmembrane Helix	212	235	0.89
Cytoplasmic	236	274	0.96
Transmembrane Helix	275	298	0.77
Non-Cytoplasmic	299	369	0.52