YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD1_MIZYE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNKSTLPG LPDINGTLNR SMTPNTGWEG PYDMSVHLHW TQFPPVTEEW HYIIGVYITI  60
   61 VGLLGIMGNT TVVYIFSNTK SLRSPSNLFV VNLAVSDLIF SAVNGFPLLT VSSFHQKWIF 120
  121 GSLFCQLYGF VGGVFGLMSI NTLTAISIDR YVVITKPLQA SQTMTRRKVH LMIVIVWVLS 180
  181 ILLSIPPFFG WGAYIPEGFQ TSCTFDYLTK TARTRTYIVV LYLFGFLIPL IIIGVCYVLI 240
  241 IRGVRRHDQK MLTITRSMKT EDARANNKRA RSELRISKIA MTVTCLFIIS WSPYAIIALI 300
  301 AQFGPAHWIT PLVSELPMML AKSSSMHNPV VYALSHPKFR KALYQRVPWL FCCCKPKEKA 360
  361 DFRTSVCSKR SVTRTESVNS DVSSVISNLS DSTTTLGLTS EGATRANRET SFRRSVSIIK 420
  421 GDEDPCTHPD TFLLAYKEVE VGNLFDMTDD QNRRDSNLHS LYIPTRVQHR PTTQSLGTTP 480
  481 GGVYIVDNGQ RVNGLTFNS

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.95
Transmembrane Helix	53	76	0.91
Cytoplasmic	77	87	0.89
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	126	0.77
Transmembrane Helix	127	148	0.87
Cytoplasmic	149	168	0.92
Transmembrane Helix	169	191	0.90
Non-Cytoplasmic	192	217	0.94
Transmembrane Helix	218	241	0.91
Cytoplasmic	242	278	0.95
Transmembrane Helix	279	301	0.89
Non-Cytoplasmic	302	499	0.67