YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPGC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.91
Transmembrane Helix	17	36	0.92
Non-Cytoplasmic	37	56	0.89
Transmembrane Helix	57	76	0.94
Cytoplasmic	77	90	0.86
Transmembrane Helix	91	113	0.87
Non-Cytoplasmic	114	136	0.94
Transmembrane Helix	137	157	0.94
Cytoplasmic	158	173	0.96
Transmembrane Helix	174	198	0.82
Non-Cytoplasmic	199	211	0.91
Transmembrane Helix	212	233	0.90
Cytoplasmic	234	241	0.74
Transmembrane Helix	242	260	0.90
Non-Cytoplasmic	261	275	0.81
Transmembrane Helix	276	298	0.86
Cytoplasmic	299	305	0.86
Transmembrane Helix	306	330	0.83
Non-Cytoplasmic	331	337	0.79
Transmembrane Helix	338	358	0.94
Cytoplasmic	359	385	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPVPAQREY FLDSIRAWLM LLGIPFHISL IYSSHTWHVN SAESSLWLTL FNDFIHSFRM  60
   61 QVFFVISGYF SYMLFLRYPL KKWWKVRVER VGIPMLTAIP LLTLPQFIML QYVKGKAESW 120
  121 PGLSLYDKYN TLAWELISHL WFLLVLVVMT TLCVWIFKRI RNNLENSDKT NKKFSMVKLS 180
  181 VIFLCLGIGY AVIRRTIFIV YPPILSNGMF NFIVMQTLFY LPFFILGALA FIFPHLKALF 240
  241 TTPSRGCTLA AALAFVAYLL NQRYGSGDAW MYETESVITM VLGLWMVNVV FSFGHRLLNF 300
  301 QSARVTYFVN ASLFIYLVHH PLTLFFGAYI TPHITSNWLG FLCGLIFVVG IAIILYEIHL 360
  361 RIPLLKFLFS GKPVVKREND KAPAR