YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OAM_ASCSU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTDNAPPG AQANKSSSPR RIRHVRRHYT SNDHRHTPST AESNPVQRIR SGEECTVELS  60
   61 MSPGQPLVEE QPLVEERPPV EEQPLVEEQP LVEEQPLVEE QPLVEEQPLV EGQPLVEEQP 120
  121 LVEGQPPVEG QPLVEEQPLV EGQPLVEGQP LVEGQPLVEG QPLVGGQPLV GGQPLVEGQP 180
  181 LVEGQPPVKV QPLVEGQPLG NMVSLYDQLP RGSILSLQKG LTLAGVTTPV DMPPLAGVIL 240
  241 LCAVLPLASV IPPASATPFA AVIPPAAVIP LPGFLPLGRL LHLADLLLRA GVLLLAGILP 300
  301 LAGAPPLAGV PPLAVALPLA GAPPLAGVPP LAGAPPLAGA LPRAGVLRRA GVLRRAGVLR 360
  361 RAGVLRRAGV LRRAGVLRRA GVLRRAGVLR RAGVLRRAGV LRRADVLRRA DVVLLAGVQQ 420
  421 LADVQRLADV QRLADVQRLA DVQRLADVQR LVCVTPLSVV SPLAAVIPAV AVIPVVAVIR 480
  481 VAAVIMLEKM QPQGSSPQLQ MGCRRIRQRR SSPRTCQKLR QERDRAGISW REHVGRHMLC 540
  541 SSTRSRYCSH RLGAACRSHC RLRCGVLCLP HALTQPTRQE RGVAEMMSTS

Type	Start	End	Confidence
Cytoplasmic	1	229	0.93
Transmembrane Helix	230	251	0.78
Non-Cytoplasmic	252	258	0.62
Transmembrane Helix	259	278	0.90
Cytoplasmic	279	285	0.75
Transmembrane Helix	286	309	0.83
Non-Cytoplasmic	310	324	0.72
Transmembrane Helix	325	347	0.79
Cytoplasmic	348	463	0.86
Transmembrane Helix	464	486	0.75
Non-Cytoplasmic	487	590	0.72