YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or67d-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKMAKVEPV ERYCKVIRMI RFCVGFCGND VADPNFRMWW LTYAVMAAIA FFFACTGYTI  60
   61 YVGVVINGDL TIILQALAMV GSAVQGLTKL LVTANNASHM REVQNTYEDI YREYGSKGDE 120
  121 YAKCLEKRIR ITWTLLIGFM LVYIILLGLV ITFPIFYLLI LHQKVLVMQF LIPFLDHTTD 180
  181 GGHLILTAAH VILITFGGFG NYGGDMYLFL FVTHVPLIKD IFCVKLTEFN ELVMKRNDFP 240
  241 KVRAMLCDLL VWHQLYTRML QTTKKIYSIV LFVQLSTTCV GLLCTISCIF MKAWPAAPLY 300
  301 LLYAAITLYT FCGLGTLVEN SNEDFLSVIY TNCLWYELPV KEEKLIIMML AKAQNEVVLT 360
  361 AADMAPLSMN TALQLTKGIY SFSMMLMNYL G

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	62	0.90
Non-Cytoplasmic	63	70	0.79
Transmembrane Helix	71	92	0.91
Cytoplasmic	93	134	0.94
Transmembrane Helix	135	160	0.88
Non-Cytoplasmic	161	181	0.89
Transmembrane Helix	182	203	0.85
Cytoplasmic	204	266	0.88
Transmembrane Helix	267	290	0.91
Non-Cytoplasmic	291	298	0.64
Transmembrane Helix	299	318	0.92
Cytoplasmic	319	391	0.79