YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12643696
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVRVDSLE FFKSHWTAWR YLGVAHFRVE NWKNLYVFYS IVSNLLVTLC YPVHLGISLF  60
   61 RNRTITEDIL NLTTFATCTA CSVKCLLYAY NIKDVLEMER LLRLLDERVV GPEQRSIYGQ 120
  121 VRVQLRNVLY VFIGIYMPCA LFAELSFLFK EERGLMYPAW FPFDWLHSTR NYYIANAYQI 180
  181 VGISFQLLQN YVSDCFPAVV LCLISSHIKM LYNRFEEVGL DPARDAEKDL EACITDHKHI 240
  241 LEWAGGSLVR VLFTFQLFSR LFRRIEAFIS LPMLIQFTVT ALNVCIGLAA LVFFVSEPMA 300
  301 RMYFIFYSLA MPLQIFPSCF FGTDNEYWFG RLHYAAFSCN WHTQNRSFKR KMMLFVEQSL 360
  361 KKSTAVAGGM MRIHLDTFFS TLKGAYSLFT IIIRMRK

Type	Start	End	Confidence
Cytoplasmic	1	34	0.68
Transmembrane Helix	35	55	0.82
Non-Cytoplasmic	56	71	0.52
Transmembrane Helix	72	88	0.43
Cytoplasmic	89	127	0.57
Transmembrane Helix	128	149	0.82
Non-Cytoplasmic	150	189	0.55
Transmembrane Helix	190	205	0.39
Cytoplasmic	206	242	0.61
Transmembrane Helix	243	259	0.39
Non-Cytoplasmic	260	272	0.41
Transmembrane Helix	273	295	0.92
Cytoplasmic	296	302	0.46
Transmembrane Helix	303	323	0.84
Non-Cytoplasmic	324	372	0.54
Transmembrane Helix	373	393	0.55
Cytoplasmic	394	397	0.76