YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or47b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDSGYQSNL SLLRVFLDEF RSVLRQESPG LIPRLAFYYV RAFLSLLCQY PNKKLASLPL  60
   61 YRWINLFIMC NVMTIFWTMF VALPESKNVI EMGDDLVWIS GMALVFTKIF YMHLRCDEID 120
  121 ELISDFEYYN RELRPHNIDE EVLGWQRLCY VIESGLYINC FCLVNFFSAA IFLQPLLGEG 180
  181 KLPFHSVYPF QWHRLDLHPY TFWFLYIWQS LTSQHNLMSI LMVDMVGIST FLQTALNLKL 240
  241 LCIEIRKLGD MEVSDKRFHE EFCRVVRFHQ HIIKLVGKAN RAFNGAFNAQ LMASFSLISI 300
  301 STFETMAAAA VDPKMAAKFV LLMLVAFIQL SLWCVSGTLV YTQSVEVAQA AFDINDWHTK 360
  361 SPGIQRDISF VILRAQKPLM YVAEPFLPFT LGTYMLVLKN CYRLLALMQE SM

Type	Start	End	Confidence
Cytoplasmic	1	62	0.90
Transmembrane Helix	63	83	0.92
Non-Cytoplasmic	84	95	0.79
Transmembrane Helix	96	112	0.88
Cytoplasmic	113	154	0.91
Transmembrane Helix	155	177	0.88
Non-Cytoplasmic	178	216	0.76
Transmembrane Helix	217	236	0.73
Cytoplasmic	237	318	0.65
Transmembrane Helix	319	341	0.87
Non-Cytoplasmic	342	379	0.55
Transmembrane Helix	380	398	0.53
Cytoplasmic	399	412	0.65