YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or46a-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGVEIFYK GQKAFLNILS LWPQIERRWR IIHQVNYVHV IVFWVLLFDL LLVLHVMANL  60
   61 SYMSEVVKAI FILATSAGHT TKLLSIKANN VQMEELFRRL DNEEFRPRGA NEELIFAAAC 120
  121 ERSRKLRDFY GALSFAALSM ILIPQFALDW SHLPLKTYNP LGENTGSPAY WLLYCYQCLA 180
  181 LSVSCITNIG FDSLCSSLFI FLKCQLDILA VRLDKIGRLI TTSGGTVEQQ LKENIRYHMT 240
  241 IVELSKTVER LLCKPISVQI FCSVLVLTAN FYAIAVLSDE RLELFKYVTY QACMLIQIFI 300
  301 LCYYAGEVTQ RSLDLPHELY KTSWVDWDYR SRRIALLFMQ RLHSTLRIRT LNPSLGFDLM 360
  361 LFSSIVNCSY SYFALLKRVN S

Type	Start	End	Confidence
Cytoplasmic	1	34	0.94
Transmembrane Helix	35	58	0.88
Non-Cytoplasmic	59	65	0.78
Transmembrane Helix	66	86	0.84
Cytoplasmic	87	128	0.96
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	169	0.92
Transmembrane Helix	170	191	0.86
Cytoplasmic	192	255	0.91
Transmembrane Helix	256	276	0.83
Non-Cytoplasmic	277	286	0.75
Transmembrane Helix	287	306	0.76
Cytoplasmic	307	354	0.77
Transmembrane Helix	355	374	0.70
Non-Cytoplasmic	375	381	0.60