YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NepYr-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHHNSHLLP GGSEKMYYIA HQQPMLRNED DNYQEGYFIR PDPASLIYNT TALPADDEGS  60
   61 NYGYGSTTTL SGLQFETYNI TVMMNFSCDD YDLLSEDMWS SAYFKIIVYM LYIPIFIFAL 120
  121 IGNGTVCYIV YSTPRMRTVT NYFIASLAIG DILMSFFCVP SSFISLFILN YWPFGLALCH 180
  181 FVNYSQAVSV LVSAYTLVAI SIDRYIAIMW PLKPRITKRY ATFIIAGVWF IALATALPIP 240
  241 IVSGLDIPMS PWHTKCEKYI CREMWPSRTQ EYYYTLSLFA LQFVVPLGVL IFTYARITIR 300
  301 VWAKRPPGEA ETNRDQRMAR SKRKMVKMML TVVIVFTCCW LPFNILQLLL NDEEFAHWDP 360
  361 LPYVWFAFHW LAMSHCCYNP IIYCYMNARF RSGFVQLMHR MPGLRRWCCL RSVGDRMNAT 420
  421 SGTGPALPLN RMNTSTTYIS ARRKPRATSL RANPLSCGET SPLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	107	0.87
Transmembrane Helix	108	131	0.91
Cytoplasmic	132	141	0.84
Transmembrane Helix	142	169	0.80
Non-Cytoplasmic	170	183	0.73
Transmembrane Helix	184	206	0.81
Cytoplasmic	207	219	0.91
Transmembrane Helix	220	242	0.93
Non-Cytoplasmic	243	273	0.96
Transmembrane Helix	274	295	0.93
Cytoplasmic	296	325	0.95
Transmembrane Helix	326	346	0.93
Non-Cytoplasmic	347	365	0.85
Transmembrane Helix	366	386	0.91
Cytoplasmic	387	464	0.95