YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUPG_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	39	0.81
Transmembrane Helix	40	61	0.94
Cytoplasmic	62	69	0.83
Transmembrane Helix	70	89	0.94
Non-Cytoplasmic	90	95	0.78
Transmembrane Helix	96	118	0.90
Cytoplasmic	119	134	0.88
Transmembrane Helix	135	155	0.90
Non-Cytoplasmic	156	161	0.79
Transmembrane Helix	162	184	0.89
Cytoplasmic	185	210	0.93
Transmembrane Helix	211	229	0.92
Non-Cytoplasmic	230	247	0.86
Transmembrane Helix	248	271	0.86
Cytoplasmic	272	277	0.78
Transmembrane Helix	278	298	0.89
Non-Cytoplasmic	299	305	0.75
Transmembrane Helix	306	327	0.90
Cytoplasmic	328	346	0.81
Transmembrane Helix	347	366	0.93
Non-Cytoplasmic	367	381	0.85
Transmembrane Helix	382	402	0.93
Cytoplasmic	403	418	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKLQLKIL SFLQFCLWGS WLTTLGSYMF VTLKFDGASI GAVYSSLGIA AVFMPALLGI  60
   61 VADKWLSAKW VYAICHTIGA ITLFMAAQVT TPEAMFLVIL INSFAYMPTL GLINTISYYR 120
  121 LQNAGMDIVT DFPPIRIWGT IGFIMAMWVV SLSGFELSHM QLYIGAALSA ILVLFTLTLP 180
  181 HIPVAKQQAN QSWTTLLGLD AFALFKNKRM AIFFIFSMLL GAELQITNMF GNTFLHSFDK 240
  241 DPMFASSFIV QHASIIMSIS QISETLFILT IPFFLSRYGI KNVMMISIVA WILRFALFAY 300
  301 GDPTPFGTVL LVLSMIVYGC AFDFFNISGS VFVEKEVSPA IRASAQGMFL MMTNGFGCIL 360
  361 GGIVSGKVVE MYTQNGITDW QTVWLIFAGY SVVLAFAFMA MFKYKHVRVP TGTQTVSH